| Sequence ID | hg18.chr11 | 
|---|---|
| Location | 93,103,792 – 93,103,915 | 
| Length | 123 | 
| Max. P | 0.914876 | 

| Location | 93,103,792 – 93,103,904 | 
|---|---|
| Length | 112 | 
| Sequences | 6 | 
| Columns | 117 | 
| Reading direction | reverse | 
| Mean pairwise identity | 80.70 | 
| Mean single sequence MFE | -30.59 | 
| Consensus MFE | -21.31 | 
| Energy contribution | -21.37 | 
| Covariance contribution | 0.06 | 
| Combinations/Pair | 1.27 | 
| Mean z-score | -2.40 | 
| Structure conservation index | 0.70 | 
| SVM decision value | 1.10 | 
| SVM RNA-class probability | 0.914876 | 
| Prediction | RNA | 
Download alignment: ClustalW | MAF
>hg18.chr11 93103792 112 - 134452384 CCAAGGCUUUUAGAAUGCAGUUUCUCAUUUGCUGUGGACAUGACCAUAAAAA-AAUUUC--CCAGUAGGUUUU-C-UAUCUGCUACUUUGCUAGCAAUCAGCUUAUUGGGAACAGUU (((.(((....((((......)))).....))).)))...............-...(((--((((((((((..-.-....(((((......)))))...)))))))))))))..... ( -27.60) >rn4.chr8 116925096 113 + 129041809 CCAAGGCUUUUAGAAUGCAGUUUCUCAUUUGCUGUGGACAUGACCAUAAAGAAAAAUUC--CCAUUAGGUUUU-C-CAUAUGCUACUUGAGUAGCACUUAACCUGUUGGGAACAUUU (((.(((....((((......)))).....))).)))...................(((--(((.((((((..-.-....((((((....))))))...)))))).))))))..... ( -30.60) >bosTau2.chr29 547350 114 - 45822729 CCAAGGCUUUUAGAACGCAGUUUCUAAUUUGCUGUGGACAUGACCGUAAAACAAAAUCC--CAACUAGGUUUUUC-UUCCUGCUACUUUGUUAGCAUACAGCCUGUUGGGAACAUUU (((.(((..((((((......))))))...))).)))...................(((--((((.(((((....-....(((((......)))))...))))))))))))...... ( -29.90) >dasNov1.scaffold_2894 17074 112 - 85457 CCAAGGCUUUUAGAAUGCAGUUUCUGAUUUGCUGUGGAGUUGACCAUAAAAAAAACUCU--CCACUGGGCUUU-C-U-UUUGCUACCUUGCUAGCCUUCAGCCUGUUGGGAACAUUC .....((.........)).(((((..((..(((((((((..................))--)))).(((((..-.-.-...((......)).)))))..)))..))..))))).... ( -27.37) >echTel1.scaffold_316886 80434 112 + 105239 CCAAGGCUUUUAGAAUGUGGUUUCUGAUUUGCUGUGGACAUGACCAUAG--ACAAUUUC--CCAGGAGGUUUU-UGUUUUUGCUACCUUGCUAGCAUAUAACCGAUUGGGGACAUUG (((.(((..((((((......))))))...))).)))............--.(((((((--((((..((((..-((((...((......)).))))...))))..))))))).)))) ( -33.40) >monDom4.chr4 174693365 113 + 430141050 CCAAGGCUUUUAGAAUGCAGUUUCUGAUU-GCUGUGGACAUGACCAUAAAAAAAAUUAUAUCCAACAGGUUU--A-UAUUUGCUAUCUUACUAGCAUCUAACCUGUUGGGAACAGUU (((.(((..((((((......))))))..-))).))).......................(((((((((((.--.-....(((((......)))))...)))))))))))....... ( -34.70) >consensus CCAAGGCUUUUAGAAUGCAGUUUCUGAUUUGCUGUGGACAUGACCAUAAAAAAAAUUUC__CCACUAGGUUUU_C_UAUUUGCUACCUUGCUAGCAUUCAACCUGUUGGGAACAUUU (((.(((..((((((......))))))...))).)))........................(((.((((((.........(((((......)))))...)))))).)))........ (-21.31 = -21.37 + 0.06)



| Location | 93,103,815 – 93,103,915 | 
|---|---|
| Length | 100 | 
| Sequences | 6 | 
| Columns | 106 | 
| Reading direction | reverse | 
| Mean pairwise identity | 82.27 | 
| Mean single sequence MFE | -25.55 | 
| Consensus MFE | -17.72 | 
| Energy contribution | -18.97 | 
| Covariance contribution | 1.25 | 
| Combinations/Pair | 1.10 | 
| Mean z-score | -1.77 | 
| Structure conservation index | 0.69 | 
| SVM decision value | 0.26 | 
| SVM RNA-class probability | 0.657153 | 
| Prediction | RNA | 
Download alignment: ClustalW | MAF
>hg18.chr11 93103815 100 - 134452384 AAUGGUCAUUACCAAGGCUUUUAGAAUGCAGUUUCUCAUUUGCUGUGGACAUGACCAUAAAAA-AAUUUCCCAGUAGGUUUU----C-UAUCUGCUACUUUGCUAG .((((((((..(((.(((....((((......)))).....))).)))..)))))))).....-........(((((((...----.-.))))))).......... ( -25.80) >rn4.chr8 116925119 98 + 129041809 ---GGUCAUUACCAAGGCUUUUAGAAUGCAGUUUCUCAUUUGCUGUGGACAUGACCAUAAAGAAAAAUUCCCAUUAGGUUUU----C-CAUAUGCUACUUGAGUAG ---((((((..(((.(((....((((......)))).....))).)))..)))))).....(((((....((....))))))----)-......((((....)))) ( -20.60) >canFam2.chr21 44003445 105 + 54024781 AAUGGUCAUUACCAAGGCUUUGAGAAUGCAGUUUCUCAUUUGCUGUGGACAUGACCAUAAAAAAAUUUUCCCGUUAGGUUUUCUUCC-UUUUUGCUAGUUUGCUAG .((((((((..(((.(((..((((((......))))))...))).)))..))))))))............((....)).........-......((((....)))) ( -28.40) >dasNov1.scaffold_2894 17097 100 - 85457 GCUGGUCAUUACCAAGGCUUUUAGAAUGCAGUUUCUGAUUUGCUGUGGAGUUGACCAUAAAAAAAACUCUCCACUGGGCUUU----C-U-UUUGCUACCUUGCUAG ((((((((...(((.(((..((((((......))))))...))).)))...))))))(((((.((((((......))).)))----.-)-)))).......))... ( -25.20) >loxAfr1.scaffold_17974 29100 99 - 49915 AAAGGUCAUUACCAAGGCUUUUAGAAUGCAGUUU--GAUUUGCUGUGGACUUGACGGUAAUAAAAACCUCCCACUAGGUUUU----C-UCUUUGCGACCUUGCUAG .((((((....(((.(((..(((((......)))--))...))).)))........((((..(((((((......)))))))----.-...))))))))))..... ( -24.40) >echTel1.scaffold_316886 80457 100 + 105239 AGUGGUCAUUACCAAGGCUUUUAGAAUGUGGUUUCUGAUUUGCUGUGGACAUGACCAUAG--ACAAUUUCCCAGGAGGUUUU----UGUUUUUGCUACCUUGCUAG .((((((((..(((.(((..((((((......))))))...))).)))..))))))))((--((((...((.....))...)----)))))..((......))... ( -28.90) >consensus AAUGGUCAUUACCAAGGCUUUUAGAAUGCAGUUUCUCAUUUGCUGUGGACAUGACCAUAAAAAAAAUUUCCCACUAGGUUUU____C_UAUUUGCUACCUUGCUAG .(((((((...(((.(((..((((((......))))))...))).)))...)))))))............((....))............................ (-17.72 = -18.97 + 1.25)



Generated by rnazCluster.pl (part of RNAz 1.0) on Fri Nov 24 16:48:58 2006